{ "_id": "6ad262ca475807f7554a6088", "Package": "rTFT", "Title": "Hazard Models for Thermal Failure Time Data", "Version": "0.1.1", "Authors@R": "person(c(\"Eduardo\", \"G.\"), \"Martins\", , \"eduardo.martins@unbc.ca\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3500-9331\"))", "Description": "Fits discrete-time survival models to the times at which\nindividual organisms fail under thermal exposure (e.g., loss of\nequilibrium, knockdown or death), using Bayesian inference in\n'Stan' through 'brms'. The hazard is the product of a failure\nrate that depends on temperature, following Kingsolver and\nUmbanhowar (2018) , and a baseline that\nmay depend on the time under exposure. Failure times may be\nknown-time, interval-censored or both, and may come from static\nassays, ramping assays or both. The failure rate may depend on\ncovariates, group-level effects and other stressors such as\ndissolved oxygen. Static and dynamic critical thermal maxima,\nthermal death time curves and thermal tolerance landscapes are\nderived from the fitted model with their posterior uncertainty.\nModels can be compared by cross-validation that leaves out\nwhole individuals or trials, averaged, and used to predict\nsurvival along a record of temperature and of any co-stressors\nrecorded with it.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Language": "en-GB", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "URL": "https://eogmartins.github.io/rTFT/,\nhttps://github.com/eogmartins/rTFT,\nhttps://github.com/eogmartins/rTFT/discussions", "BugReports": "https://github.com/eogmartins/rTFT/issues", "VignetteBuilder": "quarto", "SystemRequirements": "Quarto command line tool\n().", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "cmake make libicu-dev", "Repository": "https://eogmartins.r-universe.dev", "Date/Publication": "2026-10-16 16:43:02 UTC", "RemoteUrl": "https://github.com/eogmartins/rTFT", "RemoteRef": "v0.1.1", "RemoteSha": "e659624c8cd6f7554a95fae3a992575369f62663", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 17:38:24 UTC", "User": "root" }, "Author": "Eduardo G. Martins [aut, cre] (ORCID:\n)", "Maintainer": "Eduardo G. Martins ", "_user": "eogmartins", "_type": "src", "_file": "rTFT_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/ac2556c6e2d594e2ecbc350c52bbf19a6f109a7fb829d34d5cc65842d24400c9", "_filesize": 3590496, "_sha256": "ac2556c6e2d594e2ecbc350c52bbf19a6f109a7fb829d34d5cc65842d24400c9", "_expires": "2027-01-24T17:45:40.000Z", "_created": "2026-10-16T17:38:24.000Z", "_published": "2026-10-16T17:45:46.392Z", "_buildurl": "https://github.com/r-universe/eogmartins/actions/runs/38940590495", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117109285787, "time": 229, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12063631976" }, { "job": 117109285869, "time": 230, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12063043286" }, { "job": 117109285758, "time": 270, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12063143271" }, { "job": 117109285840, "time": 266, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12062728791" }, { "job": 117107076498, "time": 301, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12063421917" }, { "job": 117109285744, "time": 132, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12062908088" }, { "job": 117109285801, "time": 284, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12062249654" }, { "job": 117109285829, "time": 369, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12063088026" }, { "job": 117109285777, "time": 294, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12063237573" } ], "_upstream": "https://github.com/eogmartins/rTFT", "_commit": { "id": "e659624c8cd6f7554a95fae3a992575369f62663", "author": "Eduardo Martins ", "committer": "Eduardo Martins ", "message": "Release 0.1.1, which reads compared models where loo 2.10.0 puts them\n", "time": 1792168982 }, "_maintainer": { "name": "Eduardo G. Martins", "email": "eduardo.martins@unbc.ca", "login": "eogmartins", "description": "Associate Professor at UNBC. Interested in the ecology and conservation of freshwater fishes.", "uuid": 12286992, "orcid": "0000-0003-3500-9331" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "brms", "version": ">= 2.20.0", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.5.2", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "loo", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "plotly", "role": "Suggests" }, { "package": "posterior", "role": "Suggests" }, { "package": "quarto", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "eogmartins", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-36", "n": 6 }, { "week": "2026-37", "n": 6 }, { "week": "2026-40", "n": 16 }, { "week": "2026-41", "n": 43 }, { "week": "2026-42", "n": 9 } ], "_tags": [ { "name": "v0.1.0", "date": "2026-10-12" }, { "name": "v0.1.1", "date": "2026-10-16" } ], "_topics": [ "bayesian", "brms", "ctmax", "ecology", "ecophysiology", "hazard-model", "stan", "survival-analysis", "tdt", "thermal-biology", "thermal-death-time", "thermal-ecology", "thermal-tolerance", "thermal-tolerance-landscape", "time-to-event-analysis", "ttl", "quarto" ], "_stars": 1, "_contributors": [ { "user": "eogmartins", "count": 80, "uuid": 12286992 } ], "_userbio": { "uuid": 12286992, "type": "user", "name": "Eduardo Martins", "followers": 17, "description": "Associate Professor at UNBC. 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